Friday, January 19, 2018

how to download fastq files from sra website

Take
SRR1051536
 as an example


1. go visit https://www.ncbi.nlm.nih.gov/sra/SRX393264
2. click on the SRR1051536 to go to the sra site
3. find the experiment ID SRX393264, copy it
4. move curser over the "Download" on the  upper panel  and click "FASTA/FASTQ"
5. paste the experiment ID, click "show runs"
6. choose "FASTQ" as the format of data you want to download, click the "download" on the bottom right.

No comments:

Post a Comment