When running F-seq to do peak calls, I got the error message:
Exception in thread "main" java.lang.ArithmeticException: / by zero
at edu.duke.igsp.gkde.KDEChromosome.run(KDEChromosome.java:325)
at edu.duke.igsp.gkde.Main.main(Main.java:272)
It's generated by very poor quality data (low complexity)
This is a common error that can also be produced by eRange.
The developer didn't consider this case so they couldn't deal with this situation, but HOMER does.And HOMER can tell you that you call a very small number of peaks
The new hg38 annotation has mini-chromosomes which may have 0 peaks. And they make trouble.
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